Python API Reference

Modules

stubs.common	General functions: array manipulation, data i/o, etc
stubs.config	Configuration settings for simulation: plotting, reaction types, solution output, etc.
stubs.data_manipulation	Functions to help with managing solutions / post-processing
stubs.mesh	Wrapper around dolfin mesh class (originally for submesh implementation - possibly unneeded now)
stubs.model_assembly	Classes for parameters, species, compartments, reactions, fluxes, and forms Model class contains functions to efficiently solve a system
stubs.model_building	Classes/functions used to construct models
stubs.model	Model class.
stubs.solvers	Solver classes.